NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066368_10012316

Scaffold Ga0066368_10012316


Overview

Basic Information
Taxon OID3300006002 Open in IMG/M
Scaffold IDGa0066368_10012316 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_NADW_ad_2505m_LV_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3011
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005149Metagenome / Metatranscriptome410Y
F055785Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0066368_100123166F005149N/AMTKCILCTALTEQGQRFYDHLEDVHMMPIRRVRIGEDGRPREETHSECMERFMFNHEEYGTKLCWCPDCVGGEVLTRVNKICAKHGQLYINHTYK*
Ga0066368_100123168F055785GAGMRDEWKLFIGWLVIVTLLLLSGCASVAPAPNEKWSDESITLATTLTGLSMIDAKQTFMMDEYRSYFDAIEPITYVHESNPFMGPSPTSDRVVVVKLVTGVLTLYGLNKMKEVNRKKALTWLNVFYLIVVLHNNSLGLNIDL*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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