NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066375_10010432

Scaffold Ga0066375_10010432


Overview

Basic Information
Taxon OID3300006019 Open in IMG/M
Scaffold IDGa0066375_10010432 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3547
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012582Metagenome / Metatranscriptome279Y
F037260Metagenome168Y
F040145Metagenome162Y
F042931Metagenome157N
F081450Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0066375_100104323F040145AGGAMTKKEWLRERVFVDMYGRPYNLSDVPMTHMKRSEAFAKRKLSKKEISYLYRKNEKTIIIDGC*
Ga0066375_100104324F037260N/AMAKKKKTIPFHIAHNYKQWTSDQGYTFWAKDEQDAKFYLDKTEGNLGSLKEIKE*
Ga0066375_100104326F012582AGGAMTEFHKKLRHLSTTMLHWAEDNKIQRKVVEGIAGDYEIPQRNGIDWKFDFKFVTKLDRMLSDGLDDKLKKKEMEMCNQLYKYYGSVYDPV*
Ga0066375_100104327F081450N/AMVVYMTQFEEKSCKVLGVIIFLLVVMTWLQISGCSCPVPPPPSDYIDEVDTSNFV*
Ga0066375_100104329F042931AGGGGGMNREEFYMSDWDMMMKIWPNCPVDGCKNKINLNLNTGKCFPHSEGSDQWKSFKILLKNTFINRPKLLWRKMKGPIV*
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