NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075474_10000246

Scaffold Ga0075474_10000246


Overview

Basic Information
Taxon OID3300006025 Open in IMG/M
Scaffold IDGa0075474_10000246 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19415
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (68.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015795Metagenome252Y
F050680Metagenome145Y
F075345Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0075474_100002462F075345AGGAGMAKLEKDISNNVSDVIDEIISITNPSKEDLEKQIEQDKINYLVWQCGVAIKELQEAVDELAKSNKEAS*
Ga0075474_100002463F015795N/AMMMRLSYEQAVDDYNNKKVDSVLSAYKKYHILNVGMESYDPQGDLINFYDEDNSRESAL*
Ga0075474_100002466F050680N/AMAKIVEIKDKMGKPTLQEVVSRLDSMFENMVYRGEDRLNIALATISFCLAQLSLEFQDKELAKLVDEVLAQYIDKTVPK*
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