Scaffold Ga0075474

Basic Information
Taxon OID	3300006025 Open in IMG/M
Scaffold ID	Ga0075474_10000431 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15734
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (84.62%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

15734

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (84.62%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F015477	Metagenome / Metatranscriptome	254	Y
F017488	Metagenome / Metatranscriptome	240	Y
F025294	Metagenome / Metatranscriptome	202	Y
F030452	Metagenome / Metatranscriptome	185	Y
F040601	Metagenome	161	Y
F041743	Metagenome	159	Y
F046983	Metagenome	150	Y
F052627	Metagenome / Metatranscriptome	142	Y
F071194	Metagenome	122	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0075474_1000043111	F071194	GGAG	LASKFNYENFISTVHPLYQKYYDSWTLAVNSFYGGVPYRDGQYLKAYDNDYSTPSETINTYDVDDYGNQTKVYKSSVTRVNSRSEAETGLQYASNFYQEKLQNVPVFPYTRLYCSEWNAILFRTPPSRVLPDTPEVQDFIMNTDGEGNSINEFMSMVDTFTSVFGVVWVSCIKTSGSDYAKWRMHKPTDVYNWSYSYNANGDLTLNRILIRIAQEPTYEIFHYITNDEIHTIFMPLGEDVDDMDIELPMGAEFLEDEEGKGFYRIVQPNELGTANIVRPVYQSTKIQNGVGHTPTFDIAQIQRSVYSDMGEIYSAVSYGAHPVTIVDEETLNRNDNSVGAEPGSVIITQAALNGQPNYVFEFATPPLDSIQELRELINQKIEKMNQTAMIRSDELIKASRSGVQIEMYDSKLEAFIRKKATAMEQAEYNLWKIWFAWLDQDIPEDLAISYNRLYSQKGVENEIKEMNTLLDAYDRYAASFLEEIETYEPETFETQIEAENYARQLGGTGGFHTHTREDGVTIYMPFNTHEEYEMRMEMAKGANVEELPQFRKNLKEKIQKRLNQLIDSTYSDNSI*
Ga0075474_1000043112	F025294	AGGAG	MDNASTDTAEHTEQNSAPVTDSANPVDNVEQSTATDTKSDNITTPSVEIKDGKTYINGIRQYSRDDVNKISANARYEVEKSILQDLNVDSIDQVKKVVSTLQEVNPQEGQSLNVDSLRDAVKKREATVEELKAQVHSLKTDLLLKDHMSKLQSAMPTTWTQEQRAGVVDLMKARNMLAVEGDTFAIRNGDDFLTTDGETPDYNAAVEVVGKSLGLSFGKKGVDLQYGETSGTNDVSRNRPLDDARVNNDTEYRNAYLQLRKYQPSLSRDAVTDAMVKKQMTKMGYK*
Ga0075474_1000043114	F017488	GAGG	MAFITDGGGDVISFAEYTDVVQKDQRLLETNVLKVPAESGFADVTEFIEDMLEKSTNRILLKLKASTWWQGYNAYVGNPITNLNALPNINPNLIDPGNANGRRTTFTELCVYHCMAQYILPLIADFGNEESDETSKITYYDAKFNDLFNELISIADWYDYDNDGTIQADEKAITYARTRRTRSKRTIVQVR*
Ga0075474_1000043115	F052627	AGG	MSKRTDLISQITTNLAAHTTFSVSSELPFESGGIPLYDKNLNVVYVDEQQIAVEELYDTLDQQGVNTTTTTINAYLSVDAKNQINDIDTVVANLLIARNVVTGTIENTSNYETDIAEDVITYTFEYNFTTV*
Ga0075474_1000043116	F030452	AGGAG	MAGVINVTSGNQAILTLGNTAPLAVPGAAGSLAVPLVQDLTLTTSPGTVRYSTLDSTASSAFTTVVENEISFNMLLDDDVFFGLANATNEVANVGLWSTSNSKTEVFFSVAFEGSDSADYYLHGKGFIGGLAPSASIDQAVWISPGTIVVNGDLTKATV*
Ga0075474_1000043118	F015477	GAG	MEIAKAQNEIRCARADVEKASSRLAFTLSAVHNLKDRLDKDQ*
Ga0075474_100004312	F040601	GAG	MSNVQYIIKVIEPDKEYLKTFTSDLLCESKRLAQEYLWSCPEGTKYIYVATRLKEN*
Ga0075474_1000043123	F041743	AGGAG	MSLQTIIDNATFIEIDRRELMGSTLSRSGHYKTADRNINVYSFTVGMHNGLTYSTNRGVLEDIYTTGGTNEANISLNNNSGMNYITSYQGDANATQLGALTLNSISGSTLYVDTTGATGHSGTLFKKGDFIQPLGNTSTYRYPYQVTADIAFTSGNLAVSVHRPVLTQSGVALNTGGFRVGNEVRWITKITNLPKFTIAPHDRIEFSADFELIEVIT*
Ga0075474_100004314	F046983	AGGAG	MKLPEYLNKESTHVTLGVNTMSLLGLSLLWGHMLEMISLWFLPLTVLSLLAGFGSEIRKRNAN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075474_10000431

Overview

Ecosystem & Geography

Associated Families

Sequences