NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075474_10010457

Scaffold Ga0075474_10010457


Overview

Basic Information
Taxon OID3300006025 Open in IMG/M
Scaffold IDGa0075474_10010457 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3550
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005467Metagenome / Metatranscriptome400Y
F010653Metagenome / Metatranscriptome301Y
F017421Metagenome / Metatranscriptome241Y
F043151Metagenome / Metatranscriptome157N
F046716Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0075474_100104572F046716GGAGGMLEWIKKLYKRYERFTLEQYDVSPIVYKIGTKKYIKKKQFSKGPVPRTRYEK*
Ga0075474_100104573F017421GAGMYTLEKRKMIYIMTRKPVWYHTHCITPWRGTPLWYDPSWVIGDCELCRMDIEGQDWWNGSSYRNSQKRLFDNIELNKKYWY*
Ga0075474_100104576F043151AGGAMIPYTDQENEYLSSGSYRKSNTNKQRKVKQGPDLRKHDWAIRTTIEVDGRTYIVPVQV*
Ga0075474_100104577F010653N/AMIMTVCAFGFHDNTFAVFDLKEQLQWLQINLWELLHQLEYVEPHQRVIVYEEIQHIRSEIDRIVAELVTHDQAQHPLP*
Ga0075474_100104578F005467N/AMPRLATAPLQCIITCMSKPQYYYVMCEKGTLIHRCYVRMDPASADILHDSLESRYDLVQVCDVKQSEVDPALLITPAP*
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