NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075478_10000315

Scaffold Ga0075478_10000315


Overview

Basic Information
Taxon OID3300006026 Open in IMG/M
Scaffold IDGa0075478_10000315 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17678
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007971Metagenome / Metatranscriptome341Y
F016805Metagenome / Metatranscriptome244N
F025016Metagenome / Metatranscriptome203Y
F084178Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0075478_1000031512F007971GGAGMAVKSKTALGRVEHKAGRPKTTSQGYGQHSRPRRRGKKPLRGQGR*
Ga0075478_100003154F084178GGAMIVEFSVEEELRIESQARTVLHCGDSQQVAKLCASLVKQNAYLSRLVRQATGHITQLELMQVLEGLDKPDPERSETVRLLCESGNWDLTHQNDTRDRSLFVTLLLIALAPFPWLVGAFAGLLTTVMRTMTQVIRGLAS*
Ga0075478_100003157F025016N/AMDPTTIAVIAIVAAAGSEVLTLLPIRSNSWVQLLINVLNVIARKK*
Ga0075478_100003158F016805N/AVDPFLTPLVTAAIIAGVGALWRIDKRASVMDTRMALILEQITALRSDHKERLDDHEQRLRQIESRS*
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