NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075462_10019032

Scaffold Ga0075462_10019032


Overview

Basic Information
Taxon OID3300006027 Open in IMG/M
Scaffold IDGa0075462_10019032 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2216
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002858Metagenome / Metatranscriptome525Y
F024320Metagenome / Metatranscriptome206Y
F030067Metagenome / Metatranscriptome186N
F030293Metagenome / Metatranscriptome186N
F103165Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0075462_100190322F002858AGGAGMAIDEKSIYLVDGGDYQIYCLGYTQARTVTNDIMKRDPWGGIPFVFEQDQLEVSFDDKGNVVMPRVTLDRILFIASDELPQAGSEL*
Ga0075462_100190324F024320GGAGMTIDEYAAEYGGLDDNLGPTEDPETHAMVEHLVEFDTEMYRLQSRRKYKGLSYKHLEMLMVELHGKEWRDAL*
Ga0075462_100190325F030067GGAGGMPRESWEIAHDEYYDDLEAEDYVGLDDISAWKEEEQKIIDELCKRMEKAYNDDR*
Ga0075462_100190326F030293GGAGGMIVEMLDDRVSIEALGLIPHFFERSLYIEGQSIQSVADKMDSLYHYGGFVYPFSGTIVDNKGRYLADNDEDGPLDPIAKITKLGFTLWVYPYSIVGLTDDKGNQKIARFD*
Ga0075462_100190327F103165AGGAMITFYMCQITGKYFEDTLIAKTAVRVMDYPDEPPWGLYKTFDGLAVLVDSEVNKAREAVDNDS*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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