NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075462_10077896

Scaffold Ga0075462_10077896


Overview

Basic Information
Taxon OID3300006027 Open in IMG/M
Scaffold IDGa0075462_10077896 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1040
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009139Metagenome / Metatranscriptome322N
F036244Metagenome / Metatranscriptome170N

Sequences

Protein IDFamilyRBSSequence
Ga0075462_100778961F009139GGAGMRFLIIAAFLSSLSIYAEYKEDSFNEEIIRMPISFEHTQLAVTPKILTCIGEVIDFSSITLKRLIAYRDKREVIYSPETYWEKISFGNQLNVKNFKDYSFKGKAGDNLYWSSNQGSAKLNLRTDRFAANKGRIQLQATCKLKHKN
Ga0075462_100778962F036244N/AMQLTRLYFVVFLGFLSQFTFANGETESDESLLSELQSELQEVINWECSPDNPSLGKFINLKCNLLSTGD*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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