NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075466_1007439

Scaffold Ga0075466_1007439


Overview

Basic Information
Taxon OID3300006029 Open in IMG/M
Scaffold IDGa0075466_1007439 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3814
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F012581Metagenome279N
F029779Metagenome187Y
F055714Metagenome138N
F104989Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0075466_100743910F029779AGGAGMSDKEKYEELCEALAGIDATERYTHEDILSYVYNLKKIEEKFYDNKN*
Ga0075466_100743911F012581GGAGMAKYTLYAKKVYYYRKDINAQDRKSAEKRGADYEADDNAERLFEPSGEEFYITSIEESDDE*
Ga0075466_100743913F104989AGGAGVVNKMTTQEHWELHQGLWNTIGCDMQVYKQDSDRIIYIDKNSKWAYKYEHGVIERKLQTNPDRKYR*
Ga0075466_100743917F055714N/ANGVKHMRKWTSTSVVINSATEEMVKSALKDGWNFEVLTEGEHLCENSTDFDEIMENIHAVDGILEIHIHKEGEKSDWCNVILHNGDPDCEISDCTVDGYIDKWTERTDFGQKPWNDGFK*
Ga0075466_10074399F008925AGGAGMTTKTKPKIDAVTLNLINKLKKIEDTINEGAWEYIHLGDIIRLQDASQEAISHFDLRKEGGVHDYGADKGKYQQFWHSDYVCHTDPKAFDPSKVEEEDDE*
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