NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075470_10001362

Scaffold Ga0075470_10001362


Overview

Basic Information
Taxon OID3300006030 Open in IMG/M
Scaffold IDGa0075470_10001362 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7634
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (21.05%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001345Metagenome / Metatranscriptome718N
F003267Metagenome / Metatranscriptome496N
F006503Metagenome / Metatranscriptome371N
F008024Metagenome / Metatranscriptome340N
F025272Metagenome / Metatranscriptome202N
F044457Metagenome / Metatranscriptome154N

Sequences

Protein IDFamilyRBSSequence
Ga0075470_1000136215F003267N/AMKVIHYYHIYCGGNWQLILNQHMMAVCNYGLINVLDEIRVGIVGPPEQRKAVKEVLEGSMVADKVKVVVTRTNAWEQATLTEMYRASQEEEAVYLYAHTKGAANPSLTTQLWGRSMLFFNVVAWERSMQLLEGVDAVGCHWITKEQFPHMADQNNPEGYPYFGGNFWWSKSSHIKELGEPVRDHRFQAEHWIGKKPDTKVFDSNPGWPSPERFVITF*
Ga0075470_1000136217F044457N/AMKAKTYIFCHDTDIVKQCEAEGRFRDFFPYTWVMLGFKDFSGMAGLDHIIARDEPDNIESHRNLVAWTGWYALAKNGYIKNGDVVNLFEYDLTKNGDFDQRAYCAYFRVPVDVVPYWSCGDNYEPHIKQLTGRGVKEFYQPVVPVTSNYTLTWDDSYLDLTIACIEQKLVAIPHVGHILERAYSQRFADIPYNVAAFKHAFANSHGF*
Ga0075470_1000136219F008024N/AMKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISLVREMPAKSVLKRYKAIISEWNALPALGYKRKFKAGGKWWI
Ga0075470_100013627F001345N/AVNAESIVLDLYRSGEIRKACLTITGGNPLWKDLEQEVVLILLEKDPDKITKMQVQGYLRFYIVRLIMNLYRGNNNQFAKKYRHHDERVEVDPETQELSKDYDTLLDDLWAIAQQEMDSWAKDGAFPYDKELLNLLMQTGNMKAMSRETGIPYRSIIYSIEQAKAKIKTAIESNGYTGFSNPD*
Ga0075470_100013628F025272GAGMDILVFPILISALATLAVVEFRVLPSWFYALPFAKRKPFSCMTCFGFWLGVLLTIPTCQWYLAPILGLASSATAIIIREWTFK*
Ga0075470_100013629F006503GGAMTNDQFIVAQKHRKYWDQYIASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFLEVNQNTITHPLNAPANPEG*

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