Scaffold Ga0075470

Basic Information
Taxon OID	3300006030 Open in IMG/M
Scaffold ID	Ga0075470_10001362 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7634
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (21.05%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7634

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (21.05%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001345	Metagenome / Metatranscriptome	718	N
F003267	Metagenome / Metatranscriptome	496	N
F006503	Metagenome / Metatranscriptome	371	N
F008024	Metagenome / Metatranscriptome	340	N
F025272	Metagenome / Metatranscriptome	202	N
F044457	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075470_1000136215	F003267	N/A	MKVIHYYHIYCGGNWQLILNQHMMAVCNYGLINVLDEIRVGIVGPPEQRKAVKEVLEGSMVADKVKVVVTRTNAWEQATLTEMYRASQEEEAVYLYAHTKGAANPSLTTQLWGRSMLFFNVVAWERSMQLLEGVDAVGCHWITKEQFPHMADQNNPEGYPYFGGNFWWSKSSHIKELGEPVRDHRFQAEHWIGKKPDTKVFDSNPGWPSPERFVITF*
Ga0075470_1000136217	F044457	N/A	MKAKTYIFCHDTDIVKQCEAEGRFRDFFPYTWVMLGFKDFSGMAGLDHIIARDEPDNIESHRNLVAWTGWYALAKNGYIKNGDVVNLFEYDLTKNGDFDQRAYCAYFRVPVDVVPYWSCGDNYEPHIKQLTGRGVKEFYQPVVPVTSNYTLTWDDSYLDLTIACIEQKLVAIPHVGHILERAYSQRFADIPYNVAAFKHAFANSHGF*
Ga0075470_1000136219	F008024	N/A	MKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISLVREMPAKSVLKRYKAIISEWNALPALGYKRKFKAGGKWWI
Ga0075470_100013627	F001345	N/A	VNAESIVLDLYRSGEIRKACLTITGGNPLWKDLEQEVVLILLEKDPDKITKMQVQGYLRFYIVRLIMNLYRGNNNQFAKKYRHHDERVEVDPETQELSKDYDTLLDDLWAIAQQEMDSWAKDGAFPYDKELLNLLMQTGNMKAMSRETGIPYRSIIYSIEQAKAKIKTAIESNGYTGFSNPD*
Ga0075470_100013628	F025272	GAG	MDILVFPILISALATLAVVEFRVLPSWFYALPFAKRKPFSCMTCFGFWLGVLLTIPTCQWYLAPILGLASSATAIIIREWTFK*
Ga0075470_100013629	F006503	GGA	MTNDQFIVAQKHRKYWDQYIASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFLEVNQNTITHPLNAPANPEG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075470_10001362

Overview

Ecosystem & Geography

Associated Families

Sequences