NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066651_10074722

Scaffold Ga0066651_10074722


Overview

Basic Information
Taxon OID3300006031 Open in IMG/M
Scaffold IDGa0066651_10074722 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1650
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012414Metagenome / Metatranscriptome281Y
F042266Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0066651_100747221F012414AGGAMGFLPGLIWGLVIAAITVALEHYGPSSEPLHISLSGNGAIAAPVVLVPLAIFWGWSWIANAYAGRSVVPIAIYTLALLLGVSVIGPADAFFFPQTSVAQISVNDLLGGLFQGILFVGFVAVVAAPIYWVLRSRIGQSRVLIWLLYLVSLGIAAFVQGFGTIVAGGVVAGVAGGHAWQRQGGRTFIAIIVI
Ga0066651_100747223F042266N/AGDAEMPDKSRLTTQMSLLGQSLSVDTITIAGRTFSKGLMGSDWVESAANDPQGAVLDPLGQADLSSVATVKEVDRPEIDGRKTRHLSYVIDQAKLIDKMKGSASGSTPSLSVSGATGTGEIWIRTDDSQIVRQLVKLSVDLDGGLGIPGASPTTGSSKFEISFDIKFSHIGEPISPAITAPPIR*
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