NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066696_10021011

Scaffold Ga0066696_10021011


Overview

Basic Information
Taxon OID3300006032 Open in IMG/M
Scaffold IDGa0066696_10021011 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3345
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045323Metagenome153N
F061210Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0066696_100210111F061210N/AMRATEILPQVSVIDAILLFRRLGVDVTGMPPDAVKEVRRQLIHQHHPDRGGNLDMAQSINAAYDLIKHGVPKYRGSASGLSSFRRAHQRRREQVAALKLCYPEYPDWAWAGCSEDVPSRFEIYANDFTDLNFIKKSMWELSGRSEAEYTIWGFDGQHFRGRVAVFGSHNIFNYMADAMVIWQTKGNHPYPCRAVFTHETESGELYLIYAEGKHYGDSPVNIKQYSSNLNPGNDQALVCA
Ga0066696_100210113F045323GGAVPNLSAEAKRFPTPVAQLERRDVELAIQHWQQNTWGKDCVPFLDTFDFSPMKANWGQRFLICGDRAAEDGVFVTYGAGFARMLGLPAKPVTTTPFLRQLPNAYREMFSEGYSKAAMESQPVTLEGTIHFAVHAQMFRAVFMPIMLRPNWSKQLIFGSLNYRSVGPV*
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