NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075363_100080267

Scaffold Ga0075363_100080267


Overview

Basic Information
Taxon OID3300006048 Open in IMG/M
Scaffold IDGa0075363_100080267 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1784
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056724Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0075363_1000802672F056724AGGAGGMTKRLILPALLLAALALAATAAAGSGQGKGKGKGHGHHGKFGPYDVVTDDHGSCSNAWAVDTEKRTFKVRRNNDGSYTLTRYDRGTFLTNAGQSPGACNPKGKHGATVNAGVKGKFKGYLRGRITGGTFDPNASCTTPDCGFTDVWIAAFFGPTATFSCFTDSKACQFGFQYHARHQGLKFHHWYDIGKGAGTFLKERFHGDIANA*
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