NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075028_100010554

Scaffold Ga0075028_100010554


Overview

Basic Information
Taxon OID3300006050 Open in IMG/M
Scaffold IDGa0075028_100010554 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3798
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Clearfield County
CoordinatesLat. (o)41.170727Long. (o)-78.4726Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009829Metagenome / Metatranscriptome312Y
F056878Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0075028_1000105541F056878AGAAGGMENPRVHECMICGEERLAGQVWFLVAESSFEDRLQVLEWQDELAPQPGIYAACGAAHVQELVVHWMTTGSLNYPFASVGVRVVRRPHRLGAILPVVEESNTRGARQIGELAVDRESVGRALRDDPESLQVI
Ga0075028_1000105546F009829AGGAGGMFARMLEFVPKFEKKEEFIKTIRNEVLPILKKQNGFLEFLPFFPEIKNEKVITVTMWVEKKDAERYQRDVFPSVEAILKPYLNTPITWKLYTVETMLCEHFVNALTA*
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