NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0097691_1000025

Scaffold Ga0097691_1000025


Overview

Basic Information
Taxon OID3300006055 Open in IMG/M
Scaffold IDGa0097691_1000025 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)140538
Total Scaffold Genes145 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)116 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027628Metagenome / Metatranscriptome194Y
F060248Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0097691_100002570F060248GAGGLKQIVSLCMTVFLLIVTGSAQQASRNASPATAASRKRIFIDGKPISPSQIVVKDGVSYVDVSLLASALGASVHTGEGGVMILGAPKSEGCDKNSNTVEGQRFSEQFRSNVAGVADEIESLRAVVLRREKVPIGPRFDAIDRELSLSTVSVQTDADMAVYYALAYANNSLAISYYKQTRGVPVEEAQKDQLDSMMCAMESKFALMKGVLLPGGSCSVFKRIEAQGAAK*
Ga0097691_100002584F027628AGGAGGMEFLCKVCGRREGEPHGWHLVIEMGKPGTSISNTIFILDQWDERRASGANAACFCSTECREKYLSVRHQQLVA*
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