Scaffold Ga0097691

Basic Information
Taxon OID	3300006055 Open in IMG/M
Scaffold ID	Ga0097691_1000032 Open in IMG/M
Source Dataset Name	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006055 Open in IMG/M

Scaffold ID

Ga0097691_1000032 Open in IMG/M

Source Dataset Name

Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	128452
Total Scaffold Genes	136 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	92 (67.65%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

128452

Total Scaffold Genes

136 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

92 (67.65%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	Barrow Environmental Observatory site, Barrow, Alaska
Coordinates	Lat. (^o)	71.2999	Long. (^o)	-156.61	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Barrow Environmental Observatory site, Barrow, Alaska

Coordinates

Lat. (^o)

71.2999

Long. (^o)

-156.61

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F051308	Metagenome	144	Y
F051367	Metagenome	144	Y
F071593	Metagenome	122	Y
F090676	Metagenome	108	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0097691_1000032109	F051308	N/A	MTRTSKFIWLTAMLWFSLTGWIVAQCPVNNPDDDIPPELPLVTSSTRHGEPRLPESGYLSNNSYASTYFGFVFDLPLALDGHRLMMPLMPPGQHALLAMGFQEGRRSGTLLITASESNNPIHEMTDEERKAEFLAWAKGEPRNQITPPDWLTRSGRFYHISKHKGDVTTVQYWTFIKNYLIRVKVESNDRDFLSKTKLAVANVKFYCAQEDGTVIDEQGKFVPTPGEGYQGPTIPTAVVNAALDEQPALEVIPTGEAAAGVYRNDEIGLTYTYPTTWEMAKREPDPPAKDETEQRTRDVLNACSLVLLRLTSAAVEGAKSETRTIMLRAIDQTCLGLPAPASITDHLGAESLGAYLQMLGAFGELRSTNLAMRSDHLFAEYSGVVGEHPESQALAQRRNEAVAVTRHRKLLLVWTWIAASAAELDNMPKSSVSFEDAPPMELVAADVAAKR*
Ga0097691_1000032118	F071593	AGTAG	VISHRRVIIVTSLLVGISVAAWGQESHRPVAGAPPPEAAPTGAINPELETMTRAVAIQARPDQVGYFHSAIASTDVALQQSRELQTLGSAADSTPTVNARSLALRDAIDDVDHYNGRFMASFSKTQETELKPLRKRLRKSYTFVAKETKAVQQDMEPGKVVPARLASAAANLEKALSDFRTDQIRLAREMGIQSK*
Ga0097691_100003230	F051367	AGCAG	MFSLSIVLIVAGLMFGGATALIGFGGLLGAWFHRSLGAPLPLPTLRRPEERRISMWVGVAGLLLWASLFVISLKVAP*
Ga0097691_100003262	F090676	GGA	MKHFLMVAACVAALGWSCVAQAPAATTGKNTTLIGCLTGPDADDRYTLTSMQHRMGVEVVGIDELKTGAGGKVKLTGSWEPLPGAETKKGDASQRFKATAVSVIEERCTAPSPTTPVSKKKEQKKQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0097691_1000032

Overview

Ecosystem & Geography

Associated Families

Sequences