NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007876_1000088

Scaffold Ga0007876_1000088


Overview

Basic Information
Taxon OID3300006071 Open in IMG/M
Scaffold IDGa0007876_1000088 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Aug09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38989
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (81.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033624Metagenome / Metatranscriptome177Y
F074312Metagenome / Metatranscriptome119Y
F083897Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0007876_100008819F083897GGAGMSNEIADLRATPGSEADYRSLGPISICPCGSDLWNVKCKFDDDGELGIYFLDMRCALCDSLAVAPMPKLDN*
Ga0007876_100008834F033624N/AMSHGDLSFATIEAVARFNFNRAKGNDASQGHAPTWVEQVAREISGCLGEIAIARWQDKFPFALFTERKMGDVGEFEVRTTAYATGKLLITEKDDPARKYLLVTLPTFYTANIHGWMYGYEAQDAKYYNTSMRAPVYAVEQKYLHAPETIYG*
Ga0007876_100008839F074312GGTGGMDIERAKQKIEDAKTSMPLGHKDYEWMDGFNHGLDWALRILEGDKSAS*
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