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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006071 Open in IMG/M |
| Scaffold ID | Ga0007876_1000439 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Aug09 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15979 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (72.22%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Crystal Bog, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021233 | Metagenome | 219 | Y |
| F037031 | Metagenome / Metatranscriptome | 168 | Y |
| F052345 | Metagenome | 142 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0007876_100043912 | F037031 | AGGA | MTTNVNDIGGIRPEDVKVTPEQQAQINAYLAEQKREEEELGKEQPIELMESELMDVWHLLQELQYKYGNRPGTFANLTSLRNEADEKFHALGFQVVVDWVMPGLMQLNGQASPEPPTITIVGRVDGSEYNPEQNRYETGAGVADSYYDAKRKSLGMSNKKLILPGQ* |
| Ga0007876_100043916 | F052345 | AGGA | MDRRTREFNDLVKMTPTTQELLSEEIDGELFLYKSSPTCKICTTSDDLKNIIDSLLLFPKTYKEVLQAIEPLQDKLGIEGSDRINYANIRNHQKRHLPFEKAMVREIVEKRARQKNRSILDTGERLLTAEAFYEVIVAKGWEGIAQGYDKPTLTQTMHAMDMLQKLEKEGQDDYRPEELVNQLDMILSAIRDVLPADMKEALFRRIEEYQMGQAAKKPKQIRAIEAESDVEYIDEDLQEDS* |
| Ga0007876_100043918 | F021233 | AGGA | MSISKGINRGLEGLTEPELGVSHDDKFGELHEFAVRAFTWKTKPEDLAMLETIERVVDDFMKEYIDPAEVIIARFNTDKSMNDDEADRLFLNLQSAITAIEEEVTRRYLKAQYSYYMLDDKYWNAWRKPTGGTQKDLEAVAKMETREDRQFYFVQYAAWRMINDKVQSLKATQRYIQQQIYRRN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |