Scaffold Ga0081592_1078214

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0081592_1078214

Scaffold Ga0081592_1078214

Overview

Basic Information
Taxon OID	3300006076 Open in IMG/M
Scaffold ID	Ga0081592_1078214 Open in IMG/M
Source Dataset Name	Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Max Planck Institute for Plant Breeding Research
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1384
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluids → Microbial Communities In Diffuse Hydrothermal Fluids Of Manus Basin, Bismarck Sea

Source Dataset Sampling Location
Location Name	Manus Basin, Bismarck Sea
Coordinates	Lat. (^o)	-3.7999163	Long. (^o)	152.1008595	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025521	Metagenome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081592_10782143	F025521	AGG	LLLAVYKDKKYKTITVPLSQKDQVKKMLEERGIEWYTMSWSEGEKEDVKLLEECN*

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