Scaffold Ga0082015_1000598

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0082015_1000598

Scaffold Ga0082015_1000598

Overview

Basic Information
Taxon OID	3300006090 Open in IMG/M
Scaffold ID	Ga0082015_1000598 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP124
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Major University, Chile
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	6242
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Eastern Tropical South Pacific Oxygen Minumum Zone, Cruise Nbp1315, 2013

Source Dataset Sampling Location
Location Name	Eastern Topical South Pacific
Coordinates	Lat. (^o)	-13.71	Long. (^o)	-81.389	Alt. (m)		Depth (m)	250
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F057688	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0082015_10005986	F057688	AGGAG	MKNNLLKAHYPSNTIFKQHFIIVGYEFGKKLEGELHKTVDIVCDCLHPDNTVDPRIEKLITKSELRELIDNQFMKRDGDQYIANPLLIYCVDDDYFLDEKRHTAQITATKRYYGIER*

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