Basic Information | |
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Taxon OID | 3300006091 Open in IMG/M |
Scaffold ID | Ga0082018_1022937 Open in IMG/M |
Source Dataset Name | Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP125 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Major University, Chile |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 1131 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Eastern Tropical South Pacific Oxygen Minumum Zone, Cruise Nbp1315, 2013 |
Source Dataset Sampling Location | ||||||||
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Location Name | Eastern Topical South Pacific | |||||||
Coordinates | Lat. (o) | -13.71 | Long. (o) | -81.389 | Alt. (m) | Depth (m) | 405 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F015350 | Metagenome | 255 | Y |
F032036 | Metagenome / Metatranscriptome | 181 | N |
Protein ID | Family | RBS | Sequence |
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Ga0082018_10229372 | F015350 | N/A | MKKVVKWLIIIVMAILMGWQYDAIQKNFHEIESRIKKFESVDLFNHIESVDILNKKQMELQALEEEIKEKFVIQERELRTQVKTIETKLQKLRSELNDGLTKIERNVSTIDSVVDEKFKTLWMMINNK* |
Ga0082018_10229373 | F032036 | GGAG | MKWIILVYLTIAAGTTEGDIRYTRLEHPTKDFQECIDIEQQINDIIHRGRESETKYVRFLYWEYKNMLHEIKAECIYADSPVSNHKWFSEK* |
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