Scaffold Ga0082019_1015535

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0082019_1015535

Scaffold Ga0082019_1015535

Overview

Basic Information
Taxon OID	3300006093 Open in IMG/M
Scaffold ID	Ga0082019_1015535 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP189
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Major University, Chile
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	1477
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Eastern Tropical South Pacific Oxygen Minumum Zone, Cruise Nbp1315, 2013

Source Dataset Sampling Location
Location Name	Eastern Topical South Pacific
Coordinates	Lat. (^o)	-13.71	Long. (^o)	-81.389	Alt. (m)		Depth (m)	115
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032240	Metagenome	180	N
F051864	Metagenome	143	N
F056051	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0082019_10155351	F051864	N/A	MTKTITLTDEEFNRLYQLIDVEYFKLCKRVEEDRPGLSSNIEDYITHDIHTNHTKIREKS
Ga0082019_10155352	F032240	GAGG	MRLHVKCQSAPWENTTLDKEDAIDLAFNLAEEYICDVDLMYDKVMQSSGLTSRVVYTTISPS*
Ga0082019_10155354	F056051	N/A	MIFLRSEKTGSVYTLDPNTLTELYYTPMMKDGDFATCFNDEDWTAVDWMHVTFGEEEWIKPYLENIHNQLLEEVAQ*

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