NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0080690_1018576

Scaffold Ga0080690_1018576


Overview

Basic Information
Taxon OID3300006099 Open in IMG/M
Scaffold IDGa0080690_1018576 Open in IMG/M
Source Dataset NameIntestinal microbial communities from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA - t1_683P_control - viral_metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Texas Southwestern Medical Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1014
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Feces → Intestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa

Source Dataset Sampling Location
Location NameUT Southwestern Medical Center, Dallas, Texas, USA
CoordinatesLat. (o)32.815891Long. (o)-96.846336Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082888Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0080690_10185762F082888AGGAGMAQIIEIIVENKNYQIEWALSEYFGELKGKKFMLNKMAAEQIEMINNLSNTAKILLSAVAGAVIQHLIDNNCPIDNIFENGYFIVKN*FINSNCTTKNINNYSKPI*
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