NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0007810_1000664

Scaffold Ga0007810_1000664


Overview

Basic Information
Taxon OID3300006101 Open in IMG/M
Scaffold IDGa0007810_1000664 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE15Jun09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10034
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022576Metagenome213Y
F046152Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0007810_10006641F022576GAGGMTIDLNEHMEKKKQERHIAAYDAIGAAVDGMSIGTILHILSTFSATVLDQLDEPERSKAAMVFASVIIETNVKPEGSVQ*
Ga0007810_10006643F046152N/AMTISRRKFLTGLTALVATPAVIRYSGVMAVNAAQATPFATVTGLDLSGQTVVHKFWEPTNANLFAGTQEFANMVRVTSWDYGVPSRDMLPKSNHWQGTVGLDDRTVDQIIADRILKQEQQRKAWLDDPAWTIYGTVGPDTSCTTQFDSAGPIRKPWKML*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.