NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075015_100787274

Scaffold Ga0075015_100787274


Overview

Basic Information
Taxon OID3300006102 Open in IMG/M
Scaffold IDGa0075015_100787274 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)570
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NameUSA: Pennsylvania
CoordinatesLat. (o)41.1752Long. (o)-78.4168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000105Metagenome / Metatranscriptome2228Y

Sequences

Protein IDFamilyRBSSequence
Ga0075015_1007872741F000105N/AVLEQKDWGPWLARLDGDPKIYLPNAYAVEFLRHNLASNTGQLQWFRRELGRQALNPSDHARVLQQRGATSFRFTAFEEKVLWGDLADVFHLVYTFSLPDDPLRKKLAARHFDAVYLGERRMGFISEEFRSLMLEIWRVKYLKMARFREVISSIPMKIRLSHFLNDGDSPDIPIPVYVRYLNQIRELARA
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