NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007833_1029859

Scaffold Ga0007833_1029859


Overview

Basic Information
Taxon OID3300006106 Open in IMG/M
Scaffold IDGa0007833_1029859 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1034
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024962Metagenome / Metatranscriptome203N
F065718Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0007833_10298591F065718N/ATHLIGMINFMPPFDGPISYGPLERIWNFKKQIREIDPSWLLADEITLLEHQVLNQIDVIDINVPWNSARNKLRYIDLHQTVTKLRTIHPDWQMYLEDSKNHHFCKCSSCSEIKRRYQEELDATSSEELSSEEENGK*
Ga0007833_10298592F024962GAGMKILRSIVKEQVENKINPILKEKYQEHIALKLFRASIEIIRESVDRLTEMYYFDYPQHEKEDFVKEVELHVFEWKSKVQERSAENITGLDHLLSSKIIDTLEEYLEALEETNIDERQRKLYYVDSFAAVWNHRKIEDIIRHPWSVELCRRNNWIAEMPKDN*
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