NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007871_1073827

Scaffold Ga0007871_1073827


Overview

Basic Information
Taxon OID3300006110 Open in IMG/M
Scaffold IDGa0007871_1073827 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH08Jun09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)641
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088135Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0007871_10738271F088135N/AMGQAVQNEIIRMNPKLRIKSSSFATSIAPNIASNTVGSTSLVYNLRYASVKAILAVFGGNDTTQSANKLFDSFDITNSNGDFQFNIGGVNYPQKSLSTLNNKGGLMMELRRAMGSILNNNVSLSVNFNEFTIVDGGNTTARLPAKFWVAQNLQKLTVNQKAFFTGVSTQLAPINLNINIGTATTQAYTPLLVLLYDAIIEIDPATKQVLMIQ*
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