Scaffold Ga0007858_1018242

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0007858_1018242

Scaffold Ga0007858_1018242

Overview

Basic Information
Taxon OID	3300006113 Open in IMG/M
Scaffold ID	Ga0007858_1018242 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH08Aug08
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1628
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032254	Metagenome / Metatranscriptome	180	N
F042744	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007858_10182423	F032254	N/A	MCVRKVGYRVAEKRFVAIPRLPPPSDKDAMSKFVVETLCSNRACRYRQETMVQSLAQCARSCGNFSCFYPGCRVIPVLDPSPQLFCVILQA*
Ga0007858_10182424	F042744	AGCAG	MESSQVATAVVGPSVYKNVLGMIKQLRKMILKWISDRETCSPSLIQMFEGTKRWFREQVKIHFADSQKRYLQWRWRLAEKMFLQFREGQALTAAPALPRGKAAKAAKAADLHLVLQRQMGKAANASAKKRQRKRIKVAEPPQ

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