NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007858_1026802

Scaffold Ga0007858_1026802


Overview

Basic Information
Taxon OID3300006113 Open in IMG/M
Scaffold IDGa0007858_1026802 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH08Aug08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1296
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008991Metagenome / Metatranscriptome324N
F015440Metagenome / Metatranscriptome254N
F017436Metagenome / Metatranscriptome240N

Sequences

Protein IDFamilyRBSSequence
Ga0007858_10268021F015440N/AMEGISENERNFQLFKAGLSMVSCLTGEAIRVLEANLKGLQGLFFGLGQWGVIMSICIEYHEKSLVKHKEQICEKEAKIAEALTLPLIRNLRQLRDLCNKGKSEQTLLELNTFKFHIDYLSNMRHEQWTQDMLKTHIFIVIQQEM
Ga0007858_10268022F017436N/AMDGQYRKMFRETVITVQRLSVSAAVFTVTERRNNIVPQKTTTRCRTVVKMMINEIKDDITALSRNSDRYRFKRIQLALYVLLSQALSIEGSNERYKALKDMYYFMDRLKTTTFDEWKNFLITGSTEFFDNRF*
Ga0007858_10268023F008991N/ATSTMNLTVKITEQVKKKLEAVLKGKYDNRTIWMYYKVSLQMLRDILEDLIACHHTTHSLAEKDLYYEQNKVQIVDWIQWIQNRTSSDKLVDLDRLLSKLIKDKAENLVEALTEENPSDRMTTLSMLQMSIQIALFMETQQLLRSPMVIQFCEENGWAV*
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