Basic Information | |
---|---|
Taxon OID | 3300006117 Open in IMG/M |
Scaffold ID | Ga0007818_1014424 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE08Jun09 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1613 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010669 | Metagenome / Metatranscriptome | 300 | Y |
F012769 | Metagenome / Metatranscriptome | 277 | N |
F065718 | Metagenome / Metatranscriptome | 127 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0007818_10144241 | F065718 | N/A | IWNSKKVIRKIDPGWVLADKVTLLEHQVLNQIDTIDISVPWDDVENKSRYLDLYKTIIRLKAIHPDWEMYLEDSKNHHFCKCLSCSEVKRRYQEMLDATSSEESSSEEENKT* |
Ga0007818_10144242 | F012769 | AGAAG | MKFQDPKFKVRELVKDKFDPILKEEYQEEIARKLFNASIEVIRQSVNRITEQHYLSYSLEEKEDAVKEARVQVSEWKNRILIRRQEAKITRIDRALSKKILDMLAEYLRALEETDIAKRQSKLYHVDAVAAITELQINRKFASPERKPVKRKIH* |
Ga0007818_10144243 | F010669 | N/A | MELELARMEQSEDDLTDPSDSEDSNMGISETHWPSDPSEIKCRFHAYIAHEQEHLIELLNELESEVQTSSENTLVERIKRCFRCIDDIIEYATQFLKQARLIEMRDFTGFYYEIENDAKQANRQALTLLSTLRRGNLSHLASSVKELVIELDDVRILASRKTLEQVEKTLEEHGTRRTRILRQIERLFP* |
⦗Top⦘ |