NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007867_1000376

Scaffold Ga0007867_1000376


Overview

Basic Information
Taxon OID3300006120 Open in IMG/M
Scaffold IDGa0007867_1000376 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH25Aug08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16100
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (61.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026474Metagenome / Metatranscriptome197Y
F053696Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0007867_100037610F026474N/AMIARDILNTVLTKAIAEGHAKLAGNMDGLGDIVNIVLASFSGVQLIHLGWRGWLGILPIGIIGKYTTEHATKWSHKNVVEEK*
Ga0007867_100037613F053696AGGMTNNFTPQPGDAVFAHTHNPYGSMIRFAQAVRWWKYRSWNHMAIVESIDEDGTIWCIQMARRCERVKIEDVAPGGHVKIFSCPDTVNRAEAVAYARRQIGTKYGVLTIVSIAINIMLPSFFRFDIRTADTLICSALVARSWEHGSWDCPTDPFDITPAEFDGVLGGGGTQLY*
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