NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007824_1002712

Scaffold Ga0007824_1002712


Overview

Basic Information
Taxon OID3300006121 Open in IMG/M
Scaffold IDGa0007824_1002712 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE05Oct08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4290
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019426Metagenome229Y
F064358Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0007824_10027122F064358AGGAMLCYSCSKQKDQLHPCQSAILEGVSLFMCQTCIDDKLEPRWVIILAGRQKGSEFVRDYIIKHRYVGRPISAEEIIA*
Ga0007824_10027128F019426AGGLEGCIRTSQVNYIYVYMYTRTGNRPCVFRKEIMRVIVFGTKDWTDYNDLMRQVTLLIEDNKHFYPDDKEYVFVHKGMQGAENMITEYIGKTERFLRQKGYKIKEELVRDKSSFSDVTMIESDVSIALVFGDSPRNRQCMKVMDAMEIPYRYFVK*
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