Scaffold Ga0007852_1058635

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0007852_1058635

Scaffold Ga0007852_1058635

Overview

Basic Information
Taxon OID	3300006123 Open in IMG/M
Scaffold ID	Ga0007852_1058635 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH28Sep08
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	898
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003209	Metagenome	500	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007852_10586351	F003209	AGAAGG	MDGYVEPVYRHLKKAHSRGAVGVDLLTVTPVDEAGNTCLIVIVVFYTKYVWATPAKEYTAHTVASALFTFFCTFGMYDELWSDPGSDLMAEVVQKLSEWMGIRRVISLVDRHESNGVEGTNKQILRHLRTLVHDLRVPKKWSDPTILSLVLFAVNDGVNSETGVRPLDAMFGSDDSPYLRLPDSVDPSSITSAWVRGLDEDLRHIRAKSSAFQDELIKARTQDTPDETQNRYQPGDFVLFQRDPSVPRPTKLASPYTGPFEVIQQTKNDVECRHLVMGNIRVLH

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