NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007825_1080314

Scaffold Ga0007825_1080314


Overview

Basic Information
Taxon OID3300006125 Open in IMG/M
Scaffold IDGa0007825_1080314 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE13Jul09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)656
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002908Metagenome / Metatranscriptome521Y
F071950Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0007825_10803141F002908N/AMANNDDIQVDLNQDQDGQVVQNVPAGAQTTLAFRVDQSKIPEFWGQKSKDTVTAIVFIRKIEDLARTNHWTDTATYANVANGLKGFAREWLFATADMLDWTDAQLTWTNLKPRFQKQFATQTDDKQIIEGLSNLAMGPTETTGELLARITNLMVIIK
Ga0007825_10803142F071950N/ALTWKQSFLILVDSELFGRRSLYQFKRLSEETYQNHFYTLLKEDSTQ*

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