NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007805_1027469

Scaffold Ga0007805_1027469


Overview

Basic Information
Taxon OID3300006127 Open in IMG/M
Scaffold IDGa0007805_1027469 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE24Aug09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1302
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001580Metagenome668N
F089484Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0007805_10274691F089484N/ASGSSVGENLLWLLECAAAGTPIFEVGPSWISQGGRGVFRTKYCVRLPKGFRIPLHGHFPNAPARTEEEADAIFMGQPILRFWGGPDNAFICSRDSGGPAVLGHLMNTPVRGCRKGDTAYLARVTPEGLASNQDLCQPNCSFVNNPHWPQVRVRESYTAPPGSEYGVVREMLVGYGNSYDV
Ga0007805_10274692F001580N/AVYSEPQLFPLRFNAADAAKRVTAMRKEPIRGVEVHDVFYLDLRYWGYDWFDTLDLPNAYTTTYVVECKYVAWHIRRQYRFIQVMCPLFDEVLDHLWDHYYVFCYGSIRALTDAHTLIDEQFCLRYPDILPARNRDRLFHDFASHV*
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