NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075030_100006835

Scaffold Ga0075030_100006835


Overview

Basic Information
Taxon OID3300006162 Open in IMG/M
Scaffold IDGa0075030_100006835 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10207
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Clearfield County
CoordinatesLat. (o)41.170727Long. (o)-78.4726Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000629Metagenome / Metatranscriptome972Y
F026701Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0075030_10000683510F000629N/AMYRASAACFIELGPSYYSSFSTICRCSSSMPTLYFCQPHAKNQGMLRAVLSVDECERVVREHAATYVGEEFPKLGNGQSSASDFAVLNFPPNETPAGWRSGYYRLDSDLTKLNESLLALSR*
Ga0075030_10000683512F026701GGAGGMKPFSLLKIPMILVGFGAVLLLAPACKAQSEVSPDHFDGTDSWEIAARTPVATRTKPTTTTTSYQAKNKKAGPGASMQLAAVREVTKTPSRNAVALQDKRKTAVRKSDPK*
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