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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006162 Open in IMG/M |
| Scaffold ID | Ga0075030_100152153 Open in IMG/M |
| Source Dataset Name | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1871 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Pennsylvania, Clearfield County | |||||||
| Coordinates | Lat. (o) | 41.170727 | Long. (o) | -78.4726 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F036259 | Metagenome | 170 | Y |
| F059707 | Metagenome / Metatranscriptome | 133 | Y |
| F100369 | Metagenome / Metatranscriptome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0075030_1001521531 | F059707 | N/A | ADERFNAASFKDSMEEQGVVINQNDLATLIDNMRSLVKQWRSSLGEHGELVFYIDAC* |
| Ga0075030_1001521533 | F100369 | GGAG | VPTDDTIRKRDQKRLREWFLTLGSPVQSREVRVVLQYLQALDVCDLLTQSAERQAELASAALFRFGLDTLATGFWIACVATDEGLRGQGEVHIPSSLERTIATLPPQARNMLDEVVNSGFVDDSKRTLLKDVLNPAIHGDALVNVVRIGSALAQGKNWAQYLSTLMNELTHNFAVLIRELAGIDLESMAGKYTAAARQD* |
| Ga0075030_1001521534 | F036259 | N/A | LVVPHIRRYATKLRSSSFAQWRLEKPGGKLSHESRTMFGAHRRGFDWKEIAEVLHITRAVARATFWREIKRSRSKSVEAQPPAIVIQGESDSDTLKPGKPRASR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |