NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075441_10000507

Scaffold Ga0075441_10000507


Overview

Basic Information
Taxon OID3300006164 Open in IMG/M
Scaffold IDGa0075441_10000507 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19789
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (45.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020797Metagenome222Y
F042580Metagenome158Y
F047319Metagenome / Metatranscriptome150N
F052892Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0075441_1000050711F047319N/AMYREGETVIVTEKLSKTEEKHSVGTIMKPFIHKKQTFYDVLLERRTALSYLNTARSSKQAFINRDLTKRLVESGNVESTVPFKYMVDNELLPIIIA*
Ga0075441_1000050712F042580N/AMARPKLSNLQKLQNRVRKRYPGSICIQDSIGQYYIKWNDENLNDTFLLENCLTELIAWEQASITAKHEQHINRTHPMKKLVSEEQKHQNKERITRRIRKYE*
Ga0075441_1000050717F052892N/AMRPTNSMYILPTVEYQNKRFNIKRLVREDPNENIEYWKDVIDHDVVLKKDNYLWFLTEISDIEIIEE*
Ga0075441_100005073F020797GGAGMIKLQDILKSIPNQEIIESEDGQWEYPGRITRIPSNRVTMQPNPLTRKPIQHILLIIGDQSGEKQIGIPGGPDMFFPNDQSVTEYPIKRYK*
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Institute for Fundamental Biomedical Research
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