NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075441_10227188

Scaffold Ga0075441_10227188


Overview

Basic Information
Taxon OID3300006164 Open in IMG/M
Scaffold IDGa0075441_10227188 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)691
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018619Metagenome234Y
F083250Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0075441_102271881F083250AGGAGMGWTAPRDWTGIASDIVTAAMLNVDVRDNLGVLSTHTHTGAAGFGASSMTGLTLAALVTLTFADQSANPDAAGELQRNGNDILWYGSSVVNLT
Ga0075441_102271882F018619N/ATHAHSGAAGMGSSTLSEVSLSALAVPVLADQSGNPSTAGRLQRNGNNLVYYGAALVGLYADGAAGVATLRTLGTGSAQAAAGNHTH*

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