NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075443_10007453

Scaffold Ga0075443_10007453


Overview

Basic Information
Taxon OID3300006165 Open in IMG/M
Scaffold IDGa0075443_10007453 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3877
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053550Metagenome / Metatranscriptome141Y
F070556Metagenome / Metatranscriptome123Y
F092748Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0075443_100074532F053550N/ALRNKDQDHINMREEIKRARLKTKVLKQYPNARPMLTAEGVRIMSGDVYIAEEFYFPATTCEEKAWDYASVACKTTQQFNRTHPMRMDLVDIESKINRINKRRGPRVKQR*
Ga0075443_100074534F092748N/AMNKVTKVPSSMNMTAAINTEKVAHLGKNYASIDFEIKEQVNASDFKYAKMKPIIGTIIIGNRRVEVTYSELNNIMRTAADAMNLCDQSYRMGRWGKATR*
Ga0075443_100074535F070556N/AMGFHKRRIDDDQVIDMYRRHGCQGVIDWFTKGVDAVTTSGDLSEHVHDLLNIGLLTNVDKWNKISELISDASIKKGFNN*
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