NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0082029_1408213

Scaffold Ga0082029_1408213


Overview

Basic Information
Taxon OID3300006169 Open in IMG/M
Scaffold IDGa0082029_1408213 Open in IMG/M
Source Dataset NameTermite nest microbial communities from Madurai, India
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBGI Tech Solutions Co., Ltd.
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)530
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest → Termite Nest Microbial Communities From Madurai, India

Source Dataset Sampling Location
Location NameMKU,India
CoordinatesLat. (o)9.941418Long. (o)78.008896Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041422Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0082029_14082131F041422N/ATKKTKEHIAREKAGRLARVKSILAASTRRDWEADGPRLWVCKGDTQLRIVDLTEDNGRVELDEEWARSAAGAGSVALRVELSICDDSGFLAKVPVVCVDSGRAFIPWPREEDDRLVVARWHYDLCRVVSPGEYLGAYPVRSYLRRAGIVVI*
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