Scaffold Ga0082029_1580150

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0082029_1580150

Scaffold Ga0082029_1580150

Overview

Basic Information
Taxon OID	3300006169 Open in IMG/M
Scaffold ID	Ga0082029_1580150 Open in IMG/M
Source Dataset Name	Termite nest microbial communities from Madurai, India
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	BGI Tech Solutions Co., Ltd.
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1059
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest → Termite Nest Microbial Communities From Madurai, India

Source Dataset Sampling Location
Location Name	MKU,India
Coordinates	Lat. (^o)	9.941418	Long. (^o)	78.008896	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032806	Metagenome	179	Y
F042551	Metagenome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0082029_15801501	F042551	N/A	GVVVVILSILLGVVSVSAQTPSGQFFNGDSAQLGNSLRSVTFFLAAAMIIAGIIFVAVGIITSGLRESLSTWKFITGAACFAFGGICAAIYAFSQGESVPLDNQF*
Ga0082029_15801502	F032806	AGGAG	MRARPIRPNIYLPVVRFGVADSDWFSVLLISCISYLAPVPFGITLLYVPLQMWTWLLATASAIAFFNYMRIGRKPYWLQHQLKALFSHHRQYRFIPNSRKSRFDRKWITDHHDDGRSPPQTSVTISSLLLQHNNRVQEACEEKWNNDWATTN*

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