NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0082029_1728247

Scaffold Ga0082029_1728247


Overview

Basic Information
Taxon OID3300006169 Open in IMG/M
Scaffold IDGa0082029_1728247 Open in IMG/M
Source Dataset NameTermite nest microbial communities from Madurai, India
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBGI Tech Solutions Co., Ltd.
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)98275
Total Scaffold Genes81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (54.32%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest → Termite Nest Microbial Communities From Madurai, India

Source Dataset Sampling Location
Location NameMKU,India
CoordinatesLat. (o)9.941418Long. (o)78.008896Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002548Metagenome / Metatranscriptome549Y
F092677Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0082029_172824748F002548N/AMPKFEYEPQTGETSAFFERRRLRRVRMIVELTLNLISSDRTVSHREARCLVECARKAILDLFPGFEQRYERIVQPHFERILQQRWPDEEIRYTSPHELVN*
Ga0082029_172824751F092677N/AMRVFPVVSLLAALVAALAVTACGGRNAQADHQSEWHDVLKQKQAAHAPDAKPEQKQIYADSVRAFVQKHPNHGRAREVWQRMQLEFADDLSALGRNQDAIRVYRSVLAHDPVNDHARRGLATAAATLAVTHDKLLAVEKGMSHREVAKLLGKPMPGWTVEKERASVTIEAWYYRTRGGGIAAVYFREGKVFAAEEASDALHGRLGS*
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