NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070716_100206284

Scaffold Ga0070716_100206284


Overview

Basic Information
Taxon OID3300006173 Open in IMG/M
Scaffold IDGa0070716_100206284 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1310
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027967Metagenome / Metatranscriptome193Y
F101765Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0070716_1002062841F027967N/AMNHALRFAFGLTLYSCLIPQLSTLRAQSPAPSVTPSPRGSQAPKFTEQQMQEMAAKLHERVGKAADEVMGRIRNEEGDLYRRFSSFRKPDRLNPSTYTSKDDVEQWRQSLQQFKEKADTVDKLYANADPDLGNALIQQRINQAIAQQIKKALLDSFPWDIINRKNQLIKEFVSDFGDLLTFYDNNWASWKRDSAT
Ga0070716_1002062842F101765N/APGPAARVKGAQPAPTAAPRASVDPQLERLAKVADKVLDQIQTEENALYSRLNYFEKPERLDPSSFASKDEIAQWQGVLQQLKEQNDKVAGLYANVSKDLDTALKSASASQEVAARFKQFILDGFPWDQIQRKKELISEFIEAHGKLLTFYEKNWGSWIKGSDPAKPEFTSASAASIYKRLRDKIVSTSDQIQKEYKAMSE*
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