NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070712_100132731

Scaffold Ga0070712_100132731


Overview

Basic Information
Taxon OID3300006175 Open in IMG/M
Scaffold IDGa0070712_100132731 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1889
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013473Metagenome271Y
F030585Metagenome185Y
F071543Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0070712_1001327311F071543N/AAPFSCVGVQEKGGTTMRNTAALEIVWRNQKSLQRRRRWEQVNQDSAATHYLVQELVSSPLGSFWRTTSNLEFIPGGRAA*
Ga0070712_1001327312F030585GGAMFKSVFPTFLMILSTLGGSVMAGAQTQVTEGASLPERGNEKYWLVIDEFADVAIHFAYAKRFAQLHERSLTGRQCQQYSRIALDYGDQLAVVKRAGVSAESEFWNDVRVHSIGMIAAPGAPIPGHRTGNYWVTTGSEAGDRELRRLVWLEIDDVSSQLTLTGGYSFSTLNTGCLSADQEPTVKAQR*
Ga0070712_1001327313F013473AGGAGMTTLVNRHRSAKRHAQHHPYARLYRAVILRAVDDLAQTEHQDEAREWLLSPESDYAFATSGISPNSIRQQMI*
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