Basic Information | |
---|---|
Taxon OID | 3300006176 Open in IMG/M |
Scaffold ID | Ga0070765_100426302 Open in IMG/M |
Source Dataset Name | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1241 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions. |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: New Hampshire, Hubbard Brook experimental Forest | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001353 | Metagenome / Metatranscriptome | 717 | Y |
F003634 | Metagenome / Metatranscriptome | 476 | Y |
F030865 | Metagenome / Metatranscriptome | 184 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0070765_1004263021 | F001353 | AGGAGG | MEPNSPSSKILYPEWQAEYQAALLELDPKTLFERITAAETAIFNRLQAISHNSDGHAERQAIEDALAALRVLKRDGLGFPD |
Ga0070765_1004263023 | F003634 | AGGAG | MHYLQDVFSSVPLHWWAALIISVPGIAALCLRALETDGARAKRAERNNKKELRSLAEKISSYGHIVHQRYPTGDVIVCERDLAEQLRKRPDAVAIALNLLLSEQKVQRAPLRGYWKLNV* |
Ga0070765_1004263024 | F030865 | N/A | DTEAVACHIKERFPNLPIILLSAYSEMPERILWLVDEYLMKSDLPERLVPTIERAHRLAPRSNVQFSVGPTA* |
⦗Top⦘ |