NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070765_100453924

Scaffold Ga0070765_100453924


Overview

Basic Information
Taxon OID3300006176 Open in IMG/M
Scaffold IDGa0070765_100453924 Open in IMG/M
Source Dataset NameWarmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1201
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016469Metagenome / Metatranscriptome247Y
F023438Metagenome / Metatranscriptome210Y
F037833Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0070765_1004539241F016469AGGAVRYYTTKPVNGGTTFTCTFCEHSVTTLDFNNTNGNRRTQAAAAINQHAASLHVRAWVPAKLGGRGAL*
Ga0070765_1004539242F037833AGGAGMKPGDHVKIIGRDGFYVFLKEVQGTATLRLGTAKTPDEPTVAIPINQVVSLEHTR*
Ga0070765_1004539243F023438N/AMLNTIVVKPEKFTLKQILSVRCPMCGAKPKARCTASTGHPSAKTHLDRDLAAAKYARPESPSDAVLRILKAVTSRGLRILAQHK*
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