NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075367_10031727

Scaffold Ga0075367_10031727


Overview

Basic Information
Taxon OID3300006178 Open in IMG/M
Scaffold IDGa0075367_10031727 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3035
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092378Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0075367_100317274F092378GGAGMVRKILLTLAATITAALALSGCVESQMPLMTEAKPLLGQQFEVHLYENFVDGKANDFHTSVYQWKDGQYVRGSGMARDAKRFVAQSLAANDFLIQSSDDDGKVFYYWIGRKLAVGVYLIFPLNETDADMATRNAACGVNQPEGICRVRNYDQLVALARATAAKPVREAALGVVLTR*
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