NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079043_1001330

Scaffold Ga0079043_1001330


Overview

Basic Information
Taxon OID3300006179 Open in IMG/M
Scaffold IDGa0079043_1001330 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C virus_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4064
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033508Metagenome / Metatranscriptome177Y
F072527Metagenome / Metatranscriptome121N
F099550Metagenome / Metatranscriptome103Y
F101506Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0079043_100133011F033508AGGTGGMAAEAAAAPFVSSTTLRRVTGSSTTQLTIPARIGHRHVLYDVFVFGQPAYAYADVSVGTRVFIRLPGSAANCATLGPPGYKVNGKGFLWGLSDLFGAENLPNAAEDEDINITLNAAATRIDAYYAEIQPQDVSSHSVPGGSDAKIKPFIEVLDTLVTTPGNGINVLNENMPTGLGLLDANGRVKATTQFTLLTMFADYVSSGTNFTEYSRLHIFDEDEELFTPLNHEGLFIDYTVTIGDLYMSWQSQWYFKPDQPYIFKPNHQVSLKADVAAVTGSGSTLRVALIGVRERLG*
Ga0079043_10013302F099550AGGMPILRETVQCNIHSAPHVPCAQVTAMYQLTNEIKKLLATKHKSMQIVWVPLPILDEVAQVAEQLHLALNQTIIVLVIHALRESTPQPNNGSGHFLCPICLQEFNIADDFLAHLKGDEDVKIKPHI*
Ga0079043_10013307F101506AGGMNEDAVARTRIGAVEERIRSLEEQISDIRTTQLRQLERQNYVLMLLAISLITTTINLVVLLIK*
Ga0079043_10013309F072527N/AMSQQPNRLAELLQQAVLAFGAERVQVLQKIRQYIAATDCTVLNVQLQQIQNINMLRMLQAAGVPQCIQATFYLQINKALKGVTP*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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