Basic Information | |
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Taxon OID | 3300006179 Open in IMG/M |
Scaffold ID | Ga0079043_1008843 Open in IMG/M |
Source Dataset Name | Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C virus_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1027 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Yellowstone National Park | |||||||
Coordinates | Lat. (o) | 44.7219 | Long. (o) | -110.7021 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F042426 | Metagenome / Metatranscriptome | 158 | N |
F061049 | Metagenome / Metatranscriptome | 132 | Y |
F063847 | Metagenome / Metatranscriptome | 129 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0079043_10088431 | F042426 | N/A | MEGNVKRLMDLPLKSIYTIGQGETKSGFEVYYLFEYKSGNFSEKADNVYMVYATTVLGEWLTENFEKLKKAIFELEIEFRDSQYNKKIAVPVKVKKIGDKPKAPVQVQEEGF* |
Ga0079043_10088432 | F061049 | N/A | MSIFIIKFEKDDSILKEWVSEGNEDLEKALIEMLDIDFQFIKKIRGLEK* |
Ga0079043_10088433 | F063847 | AGGGGG | MKSKKYIFCYDQYSYLQDRIITHHISIYAKSLKEAESKLEKLGYKDLYLKKKKRKVIY* |
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